Test deployment

After your Docker Compose or Kubernetes installation is complete, follow these steps to test whether the application is running as expected:

1. Log in to the application.

2. Create an organization.

3. Create a workspace within the organization.

4. Create a new compute environment.

5. Add your GitHub credentials.

6. Select Quick Launch from the Launchpad tab in your workspace.

7. Enter the repository URL for the nf-core/rnaseq pipeline (https://github.com/nf-core/rnaseq).

8. In the Config profiles drop-down menu, select the test profile.

9. In Pipeline parameters, change the output directory to a location based on your compute environment:

   # Uncomment to save to an S3 bucket
   # outdir: s3://<your-bucket>/results
   
   # Uncomment to save to a scratch directory (Kubernetes)
   # outdir: /scratch/results

10. Select Launch; you'll be redirected to the Runs tab for the workflow. After a few minutes, progress logs will be listed in that workflow's Execution log tab.